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[ 源代码: python-seqcluster  ]

软件包: python3-seqcluster (1.2.9+ds-4) [multiverse]

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相似软件包:

analysis of small RNA in NGS data

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  • dep: python3-colorlog
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  • dep: python3-mirtop
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  • dep: python3-numpy
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  • dep: python3-pandas
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  • dep: python3-progressbar
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  • dep: python3-pybedtools
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  • dep: python3-pysam
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  • dep: python3-scipy
    scientific tools for Python 3
  • dep: python3-yaml
    YAML parser and emitter for Python3
  • rec: bedtools
    suite of utilities for comparing genomic features
  • rec: bowtie2
    ultrafast memory-efficient short read aligner
    或者 bowtie
    Ultrafast memory-efficient short read aligner
  • rec: fastqc
    quality control for high throughput sequence data
  • rec: libjs-bootstrap
    HTML, CSS and JS framework
  • rec: libjs-jquery
    JavaScript library for dynamic web applications
  • rec: libjs-jquery-datatables
    jQuery plug-in that makes nice tables from different data sources
  • rec: libjs-jquery-tablesorter
    jQuery flexible client-side table sorting plugin
  • rec: libjs-jquery-ui
    JavaScript UI library for dynamic web applications
  • rec: mirtop
    annotate miRNAs with a standard mirna/isomir naming
  • rec: python3-cutadapt
    Clean biological sequences from high-throughput sequencing reads (Python 3)
  • rec: python3-dateutils
    软件包暂时不可用
  • rec: python3-tz
    transitional package to rename python3-tz
  • rec: r-bioc-degreport
    BioConductor report of DEG analysis
  • rec: r-bioc-deseq2
    R package for RNA-Seq Differential Expression Analysis
  • rec: r-bioc-edger
    Empirical analysis of digital gene expression data in R
  • rec: r-bioc-htsfilter
    GNU R filter replicated high-throughput transcriptome sequencing data
  • rec: r-cran-devtools
    Tools to Make Developing R Packages Easier
  • rec: r-cran-dplyr
    GNU R grammar of data manipulation
  • rec: r-cran-ggplot2
    implementation of the Grammar of Graphics
  • rec: r-cran-gplots
    GNU R package with tools for plotting data by Greg Warnes et al
  • rec: r-cran-gridextra
    GNU R package with extensions for the grid package
  • rec: r-cran-gtools
    GNU R package with R programming tools by Greg Warnes et al
  • rec: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming
  • rec: r-cran-pheatmap
    GNU R package to create pretty heatmaps
  • rec: r-cran-reshape
    Flexibly reshape data
  • rec: rna-star
    ultrafast universal RNA-seq aligner
  • rec: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • rec: vienna-rna
    RNA sequence analysis
  • sug: seqcluster
    analysis of small RNA in NGS data

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